Learn how the Common Fund Data Ecosystem is developing an online portal that will allow researchers to access and work across multiple NIH Common Fund program data sets within a digital cloud environment.
Portal Overview
A overview of the portal for navigation of cross-project data using a flexible metadata standard for describing experimental resources in biomedicine and related fields.
Data Submission Tools and Processes
This video covers the process of submitting data to the Common Fund Data Ecosystem portal.
C2M2 Compatibility Test
The CFDE C2M2 FAIR Datapackage Assessment Appyter enables DCCs to test the FAIRness of their C2M2 compatible data packages before uploading to the CFDE portal for ingestion.
Content Registry and Knowledge Base
The Knowledge Base in the Common Fund Data Ecosystem's search portal hosts additional information on pages.
A re-usable Solution for Knowledge Management C2M2
An overview of the Knowledge Management C2M2 model for finding biomedical data using the Common Fund Data Ecosystem portal.
Knowledge Graph
The ability to access, via a human interface or an API, a vast, semantically-coherent knowledge graph integrated from data and relationships generated from different Common Fund projects.
Genes and Variants
Researchers can use the Gene-Centric Appyter to query a gene or variant of interest across all Common Fund Data Ecosystem groups for information returned in a summary report.
Drugs and Birth Defects
This video demonstrates ways for researchers to easily assemble collated and organized information on genes of interest using the ReproTox Knowledge Graph.
Cancer Research
This video describes a precision therapy use case focused on pediatric cancer using RNA-seq data from Kids First and GTEx.
Assessment of Genetic Variants in Human Disease
This video illustrates how CFDE resources are used to analyze whole genome sequencing data for the study of regulatory non-coding variants in congenital heart disease.
